This is a small collection that I hade assemble if you want to learn about botnets. I'm going to update it regularly. If you have any suggestion, don't hesitate to notice me. 

Articles :
Bots and Botnets—A Growing Threat -> http://us.norton.com/theme.jsp?themeid=botnetx
The Top 10 Botnet Events of 2010 -> The Top 10 Botnet Events of 2010 - eSecurity Planet
The Top 10 Enterprise Botnets -> The Top 10 Enterprise Botnets - Dark Reading
2010 et la prolifération des botnets... -> 2010 et la prolifération des botnets...


eBooks :
Botnet Detection Countering the Largest Security Threat.pdf

Papers :
A Framework for Understanding Botnets.pdf
All About Botnets.pdf
A Review on IRC Botnet Detection and Defence.pdf
A Survey of Botnet Technology and Defenses.pdf
A Survey of DHT Security Techniques.pdf
An Advanced Hybrid Peer-to-Peer Botnet.pdf
An Algorithm for HTTP Bot Detection.pdf
An Inside Look at Botnets.pdf
As the Net Churns : Fast Flux Botnet Observation.pdf
Bots et Botnets par CLUSIF.pdf
Botnet Communication Topologies.pdf
Botnet Detection and Response The Network is the Infection.pdf
Botnet Detection and Response Technology.pdf
Botnet Economics : Uncertainty Matters.pdf
Botnet Tracking : Tools, Techniques, and Lessons Learned.pdf
Botnets as a Vehicle for Online Crime.pdf
Botnets, Les fantômes de l'Internet.pdf
Botnets: 10 Tough Questions
Botnets : An Introduction of The World of Botnets.pdf
Bots & Botnet : An Overview.pdf
BotSniffer: Detecting Botnet Command and Control Channels in Network Traffic
Command and Control in the Fifth Domain.pdf
Detecting, Tracking, and Mitigating Botnets.pdf
Detection of Fast-Flux Botnets Detection of FastFlux Botnets.pdf
Fast-Flux Bot Detection in Real Time.PDF
Fire in the Skype : Skype Powered Botnets ... .pdf
New Botnets Trends and Threats.pdf
Overbot - A botnet protocol based on Kademlia.pdf
Reflections on Unwanted Traffic.pdf
Resilient Botnet Command and Control with Tor.pdf
Sounds Like Botnet.pdf
Take a deep breath a Stealthy, Resilient and Cost-Effective Botnet Using Skype.pdf
The Botnet Chronicles A Journey to Infamy.pdf
The New Era of Botnets.pdf
The Dark Cloud Understanding and Defending against Botnets and Stealthy Malware.pdf
Understanding Botnets and Their Security Challenges.pdf
Using DHT-based Peer-to-Peer Networks to Orchestrate a Distributed Denial of Service Attack

Botnet Source Codes :



Reverse-Engineered Botnets :
Botnets Administration. A real case : ZeuS & SpyEye
Clash of the Titans : ZeuS vs SpyEye.pdf
myLoader. Base C&C to manage Oficla/Sasfis Botnet 
PonyDOS : Reversing the crypto used by the PonyDOS attack bot.pdf
SpyEye Bot [Part one] : Analysis of a new alternative scenario crimeware
SpyEye Bot [Part two] : Conversations with the creator of crimeware
Zeus King of the Bots.pdf
Inside the Storm: Protocols and Encryption of the Storm Botnet
On the Analysis of the Zeus Botnet Crimeware Toolkit.pdf
King of Spam : Fetsi Botnet Analysis
The Passing Storm.pdf
The Anatomy of Clickbot.A.pdf
The Command Structure of the Aurora Botnet
Web 2.0 Botnet Evolution KOOBFACE Revisited.pdf

Presentations :
Black Ops of DNS The Black Hat Briefings 2004 .ppt


How-to :
How to make BOTS In VB.NET/2010 Express
ZeuS The Missing Manual 


References :
https://www.botnets.fr
Botnet | malekal's site



Videos :
Viruses, Worms and Botnet Explained -> Viruses, Worms and Botnet Explained - YouTube
How to Steal a Botnet and What Can Happen When You Do -> How to Steal a Botnet and What Can Happen When You Do - YouTube
Microsoft vs. Botnets- Software Giant Confronts Online Fraud -> Microsoft vs. Botnets- Software Giant Confronts Online Fraud - YouTube
Internet Security Solutions: Botnets -> Internet Security Solutions: Botnets Part 1 - YouTube
Understanding Botnets -> Understanding Botnets - YouTube
DEFCON 19: Android Botnets -> HakTip - DEFCON 19: Android Botnets - YouTube
Bots and Botnets: Get the Facts -> Bots and Botnets: Get the Facts - YouTube
DEFCON 18: Resilient Botnet Command and Control with Tor -> DEFCON 18: Resilient Botnet Command and Control with Tor 1/3 - YouTube
Botnet Source Code for Overachievers -> Botnet Source Code for Overachievers - YouTube
How to Make a Very Simple mIRC Bot -> How to Make a Very Simple mIRC Bot - YouTube

Have fun,
Noteworthy.
link: Download Here Package
Pass: Noteworthy

Thanks for sharing bro!

Is this all package of those Bot Source?

Thanks for sharing Big Boss

Thanks for that bro!

wow, nice collection. thanks for sharing

Good job bro, thanks

thank you very much

nice-------------------------

Thanks for sharing bro. ^^

Thanks for the information man.